{"id":12,"date":"2013-01-11T13:09:41","date_gmt":"2013-01-11T13:09:41","guid":{"rendered":"http:\/\/blopig.com\/blog\/wp-content\/uploads\/2013\/01\/xtalFREAD_pipeline.png"},"modified":"2013-01-11T13:09:41","modified_gmt":"2013-01-11T13:09:41","slug":"xtalfread_pipeline","status":"inherit","type":"attachment","link":"https:\/\/www.blopig.com\/blog\/2013\/01\/talk-membrane-protein-3d-structure-prediction-loop-modelling-in-x-ray-crystallography\/xtalfread_pipeline\/","title":{"rendered":"Fragment-based loop modelling pipeline for X-ray crystallography"},"author":2,"featured_media":0,"comment_status":"open","ping_status":"open","template":"","meta":{"nf_dc_page":"","wikipediapreview_detectlinks":true,"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"ngg_post_thumbnail":0},"class_list":["post-12","attachment","type-attachment","status-inherit","hentry"],"jetpack_sharing_enabled":true,"description":{"rendered":"<p class=\"attachment\"><a href=\"https:\/\/i0.wp.com\/www.blopig.com\/blog\/wp-content\/uploads\/2013\/01\/xtalFREAD_pipeline.png?ssl=1\"><img decoding=\"async\" loading=\"lazy\" width=\"300\" height=\"224\" src=\"https:\/\/i0.wp.com\/www.blopig.com\/blog\/wp-content\/uploads\/2013\/01\/xtalFREAD_pipeline.png?fit=300%2C224&amp;ssl=1\" class=\"attachment-medium size-medium\" alt=\"Fragment-based loop modelling pipeline for X-ray crystallography\" srcset=\"https:\/\/i0.wp.com\/www.blopig.com\/blog\/wp-content\/uploads\/2013\/01\/xtalFREAD_pipeline.png?w=2999&amp;ssl=1 2999w, https:\/\/i0.wp.com\/www.blopig.com\/blog\/wp-content\/uploads\/2013\/01\/xtalFREAD_pipeline.png?resize=300%2C224&amp;ssl=1 300w, https:\/\/i0.wp.com\/www.blopig.com\/blog\/wp-content\/uploads\/2013\/01\/xtalFREAD_pipeline.png?resize=1024%2C767&amp;ssl=1 1024w, https:\/\/i0.wp.com\/www.blopig.com\/blog\/wp-content\/uploads\/2013\/01\/xtalFREAD_pipeline.png?resize=624%2C467&amp;ssl=1 624w, https:\/\/i0.wp.com\/www.blopig.com\/blog\/wp-content\/uploads\/2013\/01\/xtalFREAD_pipeline.png?w=1250&amp;ssl=1 1250w, https:\/\/i0.wp.com\/www.blopig.com\/blog\/wp-content\/uploads\/2013\/01\/xtalFREAD_pipeline.png?w=1875&amp;ssl=1 1875w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/a><\/p>\n"},"caption":{"rendered":"<p>Given an incomplete model of a protein, as well as the current electron density map, we apply our loop modelling method FREAD to fill in a gap with many decoy structures. These decoys are then scored using a score based on electron density quality measures computed by EDSTATS. This process can be iterated to arrive at a complete model.<\/p>\n"},"alt_text":"Fragment-based loop modelling pipeline for X-ray crystallography","media_type":"image","mime_type":"image\/png","media_details":{"width":2999,"height":2249,"file":"2013\/01\/xtalFREAD_pipeline.png","sizes":{"thumbnail":{"file":"xtalFREAD_pipeline-150x150.png","width":150,"height":150,"mime_type":"image\/png","source_url":"https:\/\/i0.wp.com\/www.blopig.com\/blog\/wp-content\/uploads\/2013\/01\/xtalFREAD_pipeline.png?resize=150%2C150&ssl=1"},"medium":{"file":"xtalFREAD_pipeline-300x224.png","width":300,"height":224,"mime_type":"image\/png","source_url":"https:\/\/i0.wp.com\/www.blopig.com\/blog\/wp-content\/uploads\/2013\/01\/xtalFREAD_pipeline.png?fit=300%2C224&ssl=1"},"large":{"file":"xtalFREAD_pipeline-1024x767.png","width":1024,"height":767,"mime_type":"image\/png","source_url":"https:\/\/i0.wp.com\/www.blopig.com\/blog\/wp-content\/uploads\/2013\/01\/xtalFREAD_pipeline.png?fit=625%2C468&ssl=1"},"post-thumbnail":{"file":"xtalFREAD_pipeline-624x467.png","width":624,"height":467,"mime_type":"image\/png","source_url":"https:\/\/i0.wp.com\/www.blopig.com\/blog\/wp-content\/uploads\/2013\/01\/xtalFREAD_pipeline.png?fit=624%2C467&ssl=1"},"full":{"file":"xtalFREAD_pipeline.png?fit=2999%2C2249&ssl=1","width":2999,"height":2249,"mime_type":"image\/png","source_url":"https:\/\/i0.wp.com\/www.blopig.com\/blog\/wp-content\/uploads\/2013\/01\/xtalFREAD_pipeline.png?fit=2999%2C2249&ssl=1"}},"image_meta":{"aperture":0,"credit":"","camera":"","caption":"","created_timestamp":0,"copyright":"","focal_length":0,"iso":0,"shutter_speed":0,"title":""}},"post":8,"source_url":"https:\/\/www.blopig.com\/blog\/wp-content\/uploads\/2013\/01\/xtalFREAD_pipeline.png","_links":{"self":[{"href":"https:\/\/www.blopig.com\/blog\/wp-json\/wp\/v2\/media\/12","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.blopig.com\/blog\/wp-json\/wp\/v2\/media"}],"about":[{"href":"https:\/\/www.blopig.com\/blog\/wp-json\/wp\/v2\/types\/attachment"}],"author":[{"embeddable":true,"href":"https:\/\/www.blopig.com\/blog\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.blopig.com\/blog\/wp-json\/wp\/v2\/comments?post=12"}],"wp:attached-to":[{"embeddable":true,"post_type":"post","id":8,"href":"https:\/\/www.blopig.com\/blog\/wp-json\/wp\/v2\/posts\/8"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}